Class MarchingCubes

java.lang.Object
org.jmol.util.TriangleData
org.jmol.jvxl.calc.MarchingCubes
Direct Known Subclasses:
SimpleMarchingCubes

public class MarchingCubes extends TriangleData
  • Field Details

    • surfaceReader

      protected VertexDataServer surfaceReader
    • volumeData

      protected VolumeData volumeData
    • contourType

      protected int contourType
    • isContoured

      protected boolean isContoured
    • cutoff

      protected float cutoff
    • isCutoffAbsolute

      protected boolean isCutoffAbsolute
    • isSquared

      protected boolean isSquared
    • isXLowToHigh

      protected boolean isXLowToHigh
    • cubeCountX

      protected int cubeCountX
    • cubeCountY

      protected int cubeCountY
    • cubeCountZ

      protected int cubeCountZ
    • nY

      protected int nY
    • nZ

      protected int nZ
    • yzCount

      protected int yzCount
    • colorDensity

      protected boolean colorDensity
    • integrateSquared

      protected boolean integrateSquared
    • bsVoxels

      public javajs.util.BS bsVoxels
    • bsExcludedVertices

      protected javajs.util.BS bsExcludedVertices
    • bsExcludedTriangles

      protected javajs.util.BS bsExcludedTriangles
    • bsExcludedPlanes

      protected javajs.util.BS bsExcludedPlanes
    • edgeData

      protected javajs.util.SB edgeData
    • excludePartialCubes

      private boolean excludePartialCubes
    • isDensityRange

      private boolean isDensityRange
    • mode

      protected int mode
    • MODE_CUBE

      protected static final int MODE_CUBE
      See Also:
    • MODE_JVXL

      protected static final int MODE_JVXL
      See Also:
    • MODE_PLANES

      protected static final int MODE_PLANES
      See Also:
    • vertexValues

      protected final float[] vertexValues
    • edgeCount

      protected int edgeCount
    • voxelVertexVectors

      protected final javajs.util.V3[] voxelVertexVectors
    • edgeVectors

      protected final javajs.util.V3[] edgeVectors
    • yzPlanePts

      protected static int[] yzPlanePts
    • edgePointIndexes

      protected final int[] edgePointIndexes
    • isoPointIndexPlanes

      protected int[][][] isoPointIndexPlanes
    • yzPlanes

      protected float[][] yzPlanes
    • mappingPlane

      private javajs.util.P4 mappingPlane
    • allInside

      private boolean allInside
    • isInside

      private boolean isInside
    • offset

      private javajs.util.P3i offset
    • voxelData

      private float[][][] voxelData
    • nTriangles

      protected int nTriangles
    • bsValues

      protected javajs.util.BS bsValues
    • pt0

      protected final javajs.util.P3 pt0
    • pointA

      protected final javajs.util.P3 pointA
    • edgeVertexPointersLowToHigh

      protected static final int[] edgeVertexPointersLowToHigh
    • edgeVertexPointersHighToLow

      protected static final int[] edgeVertexPointersHighToLow
    • edgeVertexPointers

      protected int[] edgeVertexPointers
    • edgeVertexPlanesLowToHigh

      protected static final int[] edgeVertexPlanesLowToHigh
    • edgeVertexPlanesHighToLow

      protected static final int[] edgeVertexPlanesHighToLow
    • edgeVertexPlanes

      protected int[] edgeVertexPlanes
    • fReturn

      protected float[] fReturn
    • cubeVertexVectors

      protected static final javajs.util.V3[] cubeVertexVectors
    • edgeTypeTable

      protected static final int[] edgeTypeTable
    • linearOffsets

      protected final int[] linearOffsets
    • insideMaskTable

      protected static final short[] insideMaskTable
  • Constructor Details

  • Method Details

    • setParameters

      protected void setParameters(VolumeData volumeData, Parameters params)
    • calcVoxelVertexVectors

      protected void calcVoxelVertexVectors()
    • resetIndexPlane

      protected int[][] resetIndexPlane(int[][] plane)
    • getEdgeData

      public String getEdgeData()
    • getValue

      private float getValue(int x, int y, int z, int pt, int i)
    • getPlane

      private void getPlane(int i, boolean andSwap)
    • processTriangles

      protected void processTriangles(int insideMask)
    • addVertex

      protected void addVertex(int x, int y, int z, int pti, float value)
    • addTriangle

      protected void addTriangle(int ia, int ib, int ic, int edgeType)
    • getValueArray

      protected float getValueArray(int x, int y, int z, int pt, float[] tempValues)
    • isInside

      public static boolean isInside(float voxelValue, float max, boolean isAbsolute)
    • processOneCubical

      protected boolean processOneCubical(int insideMask, int x, int y, int z, int pt)
    • addEdgeData

      protected void addEdgeData(float f)
    • calcVertexPoint

      public void calcVertexPoint(int x, int y, int z, int vertex, javajs.util.P3 pt)
    • setLinearOffsets

      protected void setLinearOffsets()
    • getLinearOffset

      public int getLinearOffset(int x, int y, int z, int offset)