Package org.jmol.renderbio
Class BioMeshRenderer
java.lang.Object
org.jmol.render.ShapeRenderer
org.jmol.render.MeshRenderer
org.jmol.renderbio.BioMeshRenderer
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Field Summary
FieldsModifier and TypeFieldDescriptionprivate final javajs.util.A4
private static final int
private BioShapeRenderer
private javajs.util.BS
private javajs.util.BS
private javajs.util.P3[]
private boolean
private boolean
private final javajs.util.M3
private Mesh[]
private boolean[]
private static final int
private static final int
private static final int
private static final int
private static final int
private javajs.util.V3
private final javajs.util.V3
private final javajs.util.P3
private final javajs.util.P3
private final javajs.util.P3
private final javajs.util.P3
private javajs.util.P3[]
private final javajs.util.V3
private final javajs.util.V3
private javajs.util.V3[]
private final javajs.util.V3
Fields inherited from class org.jmol.render.MeshRenderer
allowDashed, antialias, bsPolygons, bsPolygonsToExport, diameter, exportPass, forceShowTriangles, frontOnly, haveBsDisplay, imageFontScaling, isGhostPass, isShell, isTranslucent, isTranslucentInherit, latticeOffset, mesh, meshSlabValue, needTranslucent, normixes, p3Screens, pt1f, pt1i, pt2f, pt2i, pt3i, renderLow, scalePixelsPerMicron, screens, selectedPolyOnly, thePlane, transformedVectors, vertexCount, vertices, volumeRender, width
Fields inherited from class org.jmol.render.ShapeRenderer
colix, exportType, g3d, isExport, mad, ms, myVisibilityFlag, shape, shapeID, tm, vwr
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescription(package private) void
adjustCartoonSeamNormals
(int i, int nPer) Matches normals for adjacent mesh sections to create a seamless overall mesh.boolean
check
(boolean doCap0, boolean doCap1) private boolean
checkDiameter
(int d) private boolean
createMesh
(int i, int madBeg, int madMid, int madEnd, float aspectRatio, int tension) Cartoon meshes are triangulated objects.void
initBS()
void
initialize
(ShapeRenderer bsr, BioShape bioShape, int monomerCount) protected boolean
render()
private void
renderBioMesh
(Mesh mesh) void
void
setFancyArrowHead
(int i) void
setFancyConic
(int i, int tension) void
setFancyRibbon
(int i) Methods inherited from class org.jmol.render.MeshRenderer
checkFront, drawEdge, drawTriangle, exportSurface, isPolygonDisplayable, isVisibleNormix, render2, render2b, renderMesh2, renderPoints, renderTriangles, setColix
Methods inherited from class org.jmol.render.ShapeRenderer
initRenderer, isVisibleForMe, renderShape, setup, setViewerG3dShapeID
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Field Details
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meshes
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meshReady
private boolean[] meshReady -
bsRenderMesh
private javajs.util.BS bsRenderMesh -
bsr
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doCap0
private boolean doCap0 -
doCap1
private boolean doCap1 -
ABSOLUTE_MIN_MESH_SIZE
private static final int ABSOLUTE_MIN_MESH_SIZE- See Also:
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MIN_MESH_RENDER_SIZE
private static final int MIN_MESH_RENDER_SIZE- See Also:
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controlHermites
private javajs.util.P3[] controlHermites -
wingHermites
private javajs.util.V3[] wingHermites -
radiusHermites
private javajs.util.P3[] radiusHermites -
norm
private javajs.util.V3 norm -
wing
private final javajs.util.V3 wing -
wing1
private final javajs.util.V3 wing1 -
wingT
private final javajs.util.V3 wingT -
aa
private final javajs.util.A4 aa -
pt
private final javajs.util.P3 pt -
pt1
private final javajs.util.P3 pt1 -
ptPrev
private final javajs.util.P3 ptPrev -
ptNext
private final javajs.util.P3 ptNext -
mat
private final javajs.util.M3 mat -
MODE_TUBE
private static final int MODE_TUBE- See Also:
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MODE_FLAT
private static final int MODE_FLAT- See Also:
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MODE_ELLIPTICAL
private static final int MODE_ELLIPTICAL- See Also:
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MODE_NONELLIPTICAL
private static final int MODE_NONELLIPTICAL- See Also:
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bsTemp
private javajs.util.BS bsTemp -
norml
private final javajs.util.V3 norml
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Constructor Details
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BioMeshRenderer
public BioMeshRenderer()
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Method Details
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render
protected boolean render()- Specified by:
render
in classShapeRenderer
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initialize
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renderBioMesh
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setFancyRibbon
public void setFancyRibbon(int i) -
setFancyConic
public void setFancyConic(int i, int tension) -
setFancyArrowHead
public void setFancyArrowHead(int i) -
createMesh
private boolean createMesh(int i, int madBeg, int madMid, int madEnd, float aspectRatio, int tension) Cartoon meshes are triangulated objects.- Parameters:
i
-madBeg
-madMid
-madEnd
-aspectRatio
-tension
-- Returns:
- true if deferred rendering is required due to normals averaging
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adjustCartoonSeamNormals
void adjustCartoonSeamNormals(int i, int nPer) Matches normals for adjacent mesh sections to create a seamless overall mesh. We use temporary normals here. We will convert normals to normixes later.- Parameters:
i
-nPer
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renderMeshes
public void renderMeshes() -
initBS
public void initBS() -
check
public boolean check(boolean doCap0, boolean doCap1) -
checkDiameter
private boolean checkDiameter(int d)
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