Package org.jmol.util
Class MeshSurface
java.lang.Object
org.jmol.util.MeshSurface
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Field Summary
FieldsModifier and TypeFieldDescriptionjavajs.util.T3[]
javajs.util.BS
javajs.util.BS
javajs.util.BS
javajs.util.BS
short
short
boolean
boolean
boolean
protected int
protected int
protected int
boolean
boolean
boolean
private short
private int
javajs.util.M4
int
int
int
javajs.util.T3[]
javajs.util.V3[]
int
int
javajs.util.V3[]
javajs.util.P3
static final int
static final int
static final int
int
polygon countshort[]
polygon color index "colix" arrayint[][]
polygon indexesint
protected static final int
short
int
javajs.util.SB
private MeshSlicer
javajs.util.BS
javajs.util.BS[]
int
vertex countshort[]
vertex color index "colix" arrayint
int[]
int[]
javajs.util.T3[]
verticesfloat[]
vertex values -
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionint
addPolygon
(int[] polygon, javajs.util.BS bs) protected int
addPolygonC
(int[] polygon, int color, javajs.util.BS bs, boolean isExplicit) (package private) int
addPolygonV3
(int vertexA, int vertexB, int vertexC, int check, int iContour, int color, javajs.util.BS bs) void
addQuad
(int vertexA, int vertexB, int vertexC, int vertexD) void
addTriangle
(int vertexA, int vertexB, int vertexC) int
addTriangleCheck
(int vertexA, int vertexB, int vertexC, int check, int iContour, int color) int
addV
(javajs.util.T3 vertex, boolean asCopy) int
addVCVal
(javajs.util.T3 vertex, float value, boolean asCopy) int[][]
getFaces()
float
static MeshSurface
getSphereData
(int lvl) Calculates the data (faces, vertices, normals) for a sphere.static float
getSphericalInterpolationFraction
(double r, double valueA, double valueB, double d) javajs.util.T3[]
void
static MeshSurface
newMesh
(boolean isAlt, javajs.util.T3[] vertices, int vertexCount, int[][] polygonIndexes, javajs.util.T3[] normals, int nNormals) void
protected int[]
setABC
(int i) void
setBoundingBox
(javajs.util.P3[] boundBoxPoints) void
setBox
(javajs.util.P3 xyzMin, javajs.util.P3 xyzMax) void
setColix
(short colix) void
setColixBack
(short colix) void
setPolygonCount
(int polygonCount) void
setTranslucentVertices
(javajs.util.BS bsVertices) Must create bsTransPolygons, polygonTranslucencies, and new triangle set for partially translucent polygonsprotected void
slabBrillouin
(javajs.util.P3[] unitCellVectors) void
slabPolygonsList
(javajs.util.Lst<Object[]> slabInfo, boolean allowCap)
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Field Details
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SEED_COUNT
protected static final int SEED_COUNT- See Also:
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P_CHECK
public static final int P_CHECK- See Also:
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P_CONTOUR
public static final int P_CONTOUR- See Also:
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P_EXPLICIT_COLOR
public static final int P_EXPLICIT_COLOR- See Also:
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vwr
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slicer
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oabc
public javajs.util.V3[] oabc -
meshType
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vc
public int vcvertex count -
vs
public javajs.util.T3[] vsvertices -
vvs
public float[] vvsvertex values -
vertexSource
public int[] vertexSource -
surfaceAtoms
public javajs.util.BS surfaceAtoms -
pc
public int pcpolygon count -
pis
public int[][] pispolygon indexes -
colorsExplicit
public boolean colorsExplicit -
isDrawPolygon
public boolean isDrawPolygon -
haveQuads
public boolean haveQuads -
colix
public short colix -
colixBack
public short colixBack -
isColorSolid
public boolean isColorSolid -
offset
public javajs.util.P3 offset -
altVertices
public javajs.util.T3[] altVertices -
pcs
public short[] pcspolygon color index "colix" array -
vcs
public short[] vcsvertex color index "colix" array -
normals
public javajs.util.T3[] normals -
normalsTemp
public javajs.util.V3[] normalsTemp -
normalCount
public int normalCount -
normixCount
public int normixCount -
bsPolygons
public javajs.util.BS bsPolygons -
mat4
public javajs.util.M4 mat4 -
surfaceSet
public javajs.util.BS[] surfaceSet -
vertexSets
public int[] vertexSets -
nSets
public int nSets -
dataOnly
public boolean dataOnly -
lastColor
private int lastColor -
lastColix
private short lastColix -
iA
protected int iA -
iB
protected int iB -
iC
protected int iC -
polygonCount0
public int polygonCount0 -
vertexCount0
public int vertexCount0 -
bsSlabDisplay
public javajs.util.BS bsSlabDisplay -
bsSlabGhost
public javajs.util.BS bsSlabGhost -
slabMeshType
public int slabMeshType -
slabColix
public short slabColix -
bsDisplay
public javajs.util.BS bsDisplay -
slabOptions
public javajs.util.SB slabOptions -
mergeVertexCount0
public int mergeVertexCount0 -
mergePolygonCount0
public int mergePolygonCount0 -
isMerged
public boolean isMerged
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Constructor Details
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MeshSurface
public MeshSurface()
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Method Details
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getMeshSlicer
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newMesh
public static MeshSurface newMesh(boolean isAlt, javajs.util.T3[] vertices, int vertexCount, int[][] polygonIndexes, javajs.util.T3[] normals, int nNormals) -
getVertices
public javajs.util.T3[] getVertices()- Returns:
- The vertices.
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getFaces
public int[][] getFaces()- Returns:
- faces, if defined (in exporter), otherwise polygonIndexes
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setColix
public void setColix(short colix) -
setColixBack
public void setColixBack(short colix) -
addV
public int addV(javajs.util.T3 vertex, boolean asCopy) -
addTriangle
public void addTriangle(int vertexA, int vertexB, int vertexC) -
addQuad
public void addQuad(int vertexA, int vertexB, int vertexC, int vertexD) -
setPolygonCount
public void setPolygonCount(int polygonCount) -
addVCVal
public int addVCVal(javajs.util.T3 vertex, float value, boolean asCopy) -
addTriangleCheck
public int addTriangleCheck(int vertexA, int vertexB, int vertexC, int check, int iContour, int color) -
addPolygonV3
int addPolygonV3(int vertexA, int vertexB, int vertexC, int check, int iContour, int color, javajs.util.BS bs) -
addPolygonC
protected int addPolygonC(int[] polygon, int color, javajs.util.BS bs, boolean isExplicit) -
addPolygon
public int addPolygon(int[] polygon, javajs.util.BS bs) -
invalidatePolygons
public void invalidatePolygons() -
setABC
protected int[] setABC(int i) -
setTranslucentVertices
public void setTranslucentVertices(javajs.util.BS bsVertices) Must create bsTransPolygons, polygonTranslucencies, and new triangle set for partially translucent polygons- Parameters:
bsVertices
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getSlabColor
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getSlabType
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resetSlab
public void resetSlab() -
slabPolygonsList
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slabBrillouin
protected void slabBrillouin(javajs.util.P3[] unitCellVectors) - Parameters:
unitCellVectors
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getResolution
public float getResolution() -
getSphereData
Calculates the data (faces, vertices, normals) for a sphere.- Parameters:
lvl
-- Returns:
- The data.
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setBox
public void setBox(javajs.util.P3 xyzMin, javajs.util.P3 xyzMax) -
setBoundingBox
public void setBoundingBox(javajs.util.P3[] boundBoxPoints) - Parameters:
boundBoxPoints
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getSphericalInterpolationFraction
public static float getSphericalInterpolationFraction(double r, double valueA, double valueB, double d)
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